**Supplementary Information**

**Storey JD and Tibshirani R. (2002) Statistical significance for
genome-wide studies. Proceedings of the National Academy of Sciences,
100: 9440-9445.** [PDF]

- The web site containing the publicly available Hedenfalk et al. data
- The R code used in analyzing the data.
- The data file used in the above code.
- The results including all the information from the original data plus q-values, p-values, and fold change (in log base 2). In tab-delimited format.
- The same results from above, but sorted by significance
- Figure 1, Figure 2a, Figure 2b, Figure 2c, Figure 2d, Figure 3
- Storey JD. (2003)
*Ann. Stat.*, in press. [PDF] - Storey JD, Taylor JE, Siegmund D. (2003)
*J. R. Stat. Soc. B*, in press. [PDF] - Press Coverage #1
- Press Coverage #2

Also, you can download general software here.

This work was supported in part by the following NIH glue grant.